"Excellent instructor and course content. Please refer to our Terms and Conditions for further information. However, more than two non-attendances or late cancellations without good reason will be logged and may mean you cannot attend any further MSD training that term. Where no cost is indicated in the shopping trolley, no deposit is required. Survey results are downloaded and stored anonymously. This is to ensure we receive the feedback we need to evaluate and improve our courses. Once you have submitted the survey, you will be sent an email with a link to your attendance certificate. It is now a requirement that you complete the three short questions in the survey you receive after attending the course. ATTENDANCE CERTIFICATE ON SURVEY COMPLETION An email with the instructions will be sent to you. Before the course, you will need to download Fiji. Having a computer with two monitors may be beneficial. WHAT YOU WILL NEEDĪ good internet connection, uninterrupted time, camera and microphone enabled on your PC. Questions and responses will also be managed in the chat. At the end of the lecture there will be exercises - the tutor will then go through the exercises and the solutions. ![]() The tutor will share his screen with the slides. Once the tutor has started the session they will tell you what to do. To join the session, you can click on the link 15 minutes before the session. ![]() Where to find online resources for continued developmentĪt the end of the course, participants will be able toīooking confirmation and reminder emails will send you the link for the live interactive sessions (held in Teams) and joining instructions.Best practise with regards to microscopy image analysis and how to avoid common pitfalls.How to use machine learning for image segmentation and de-noising.How programming and scripting works in Fiji/ImageJ.How to keep Fiji/ImageJ up-to-date and how to install plugins.Recommended plugins and image analysis tools.How to manage measurements through curating regions of interest.The basic approaches to segmentation and intensity measurements in 2D and 3D.How to interact with the Fiji/ImageJ interface and functions.This course will cover the following topics: They will also learn where and how to access additional help in the future.Īt the tutor’s discretion, some of the scheduled sessions may run into the afternoon if extra time is needed. Attendees will be shown a variety of techniques and worked examples. This course consists of four 2.5 hour live interactive online sessions that aims to provide the basic skills necessary to tackle the most common image analysis tasks. It can be done using a command terminal but also using GitHub Desktop. Help on "cloning a repository", can be found on the help.github page. In Fiji, open the script editor using Plugins>New Macro.ĭownload as a Zip file (You'll need to download the Zip file again if there were updates)Ĭlone (you will have to update the folder each week, as new files may be added or updated).A new tab should open and show you the code in plain text.ijm'ī- Copy the raw text from the link to FIJI ![]()
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